Models

Run pip install napari[all] before running these examples.

This folder of models examples consists of a set of simulations that are being actively developed and will run as is.

Each model is named with the schema <sample-angular-assumptions>_<sample-spatial-assumptions>_<data-shape>.

For example, isotropic_thin_3d.py demonstrates a set of methods for simulating and reconstructing

• an isotropic object (i.e. an attenuating-phase object that has no diattenuation or birefringence) that is

• thin compared to the depth of field of the microscope from

• three-dimensional data (a defocus stack).

In plane oriented thick pol3d

In plane oriented thick pol3d

Isotropic fluorescent thick 3d

Isotropic fluorescent thick 3d

phase thick 3d

phase thick 3d

In plane oriented thick pol3d vector

In plane oriented thick pol3d vector

Isotropic thin 3d

Isotropic thin 3d