API Reference

• Settings
  • BirefringenceApplyInverseSettings
    • BirefringenceApplyInverseSettings.background_path
    • BirefringenceApplyInverseSettings.check_background_path()
    • BirefringenceApplyInverseSettings.flip_orientation
    • BirefringenceApplyInverseSettings.remove_estimated_background
    • BirefringenceApplyInverseSettings.rotate_orientation
  • BirefringenceSettings
    • BirefringenceSettings.apply_inverse
    • BirefringenceSettings.transfer_function
  • BirefringenceTransferFunctionSettings
    • BirefringenceTransferFunctionSettings.swing
    • BirefringenceTransferFunctionSettings.swing_range()
  • FluorescenceSettings
    • FluorescenceSettings.apply_inverse
    • FluorescenceSettings.transfer_function
  • FluorescenceTransferFunctionSettings
    • FluorescenceTransferFunctionSettings.warn_unit_consistency()
    • FluorescenceTransferFunctionSettings.wavelength_emission
  • FourierApplyInverseSettings
    • FourierApplyInverseSettings.TV_iterations
    • FourierApplyInverseSettings.TV_rho_strength
    • FourierApplyInverseSettings.reconstruction_algorithm
    • FourierApplyInverseSettings.regularization_strength
  • FourierTransferFunctionSettings
    • FourierTransferFunctionSettings.index_of_refraction_media
    • FourierTransferFunctionSettings.na_det()
    • FourierTransferFunctionSettings.numerical_aperture_detection
    • FourierTransferFunctionSettings.warn_unit_consistency()
    • FourierTransferFunctionSettings.yx_pixel_size
    • FourierTransferFunctionSettings.z_focus_offset
    • FourierTransferFunctionSettings.z_padding
    • FourierTransferFunctionSettings.z_pixel_size
  • MyBaseModel
  • PhaseSettings
    • PhaseSettings.apply_inverse
    • PhaseSettings.transfer_function
  • PhaseTransferFunctionSettings
    • PhaseTransferFunctionSettings.invert_phase_contrast
    • PhaseTransferFunctionSettings.na_ill()
    • PhaseTransferFunctionSettings.numerical_aperture_illumination
  • ReconstructionSettings
    • ReconstructionSettings.birefringence
    • ReconstructionSettings.fluorescence
    • ReconstructionSettings.input_channel_names
    • ReconstructionSettings.phase
    • ReconstructionSettings.reconstruction_dimension
    • ReconstructionSettings.time_indices
    • ReconstructionSettings.validate_reconstruction_types()
  • WavelengthIllumination
    • WavelengthIllumination.wavelength_illumination
• Stokes
  • Overview
  • Usage
  • apply_orientation_offset()
  • calculate_intensity_to_stokes_matrix()
  • calculate_stokes_to_intensity_matrix()
  • estimate_adr_from_stokes()
  • estimate_ar_from_stokes012()
  • mmul()
  • mueller_from_stokes()
  • stokes012_after_ar()
  • stokes_after_adr()

Index

• Index

• Search Page